NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193108_106625

Scaffold Ga0193108_106625


Overview

Basic Information
Taxon OID3300018669 Open in IMG/M
Scaffold IDGa0193108_106625 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003043 (ERX1789562-ERR1719304)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_139
CoordinatesLat. (o)6.4946Long. (o)-95.0463Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102196Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0193108_1066251F102196GGAGLSLQQVRDVEAAITMAKGVVLLRILAMKEKETATDQEMEVSMMVMLDARETLFVEAIIAFSLELTSIPRTIAVRDQIIPHKILHHLLEAILVNNNMDGDHGQLGQLVVHNVDLVKNQGGELVRAYNVAQISSTSLKIRKDLVKAKDATIFSHR

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