Scaffold Ga0193159_1021551

Overview

Basic Information

• Taxon OID: 3300018666
• Scaffold ID: Ga0193159_1021551
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000398 (ERX1782307-ERR1712184)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 829
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_025
• Coordinates
  • Lat. (^o): 39.3991
  • Long. (^o): 19.3997
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F013304	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193159_10215511	F013304	N/A	KNNSDQMTPEDRVSHTMELQEDVSAKVDVIKKNVAEELELLPQGDKVPQDAQDHKNELKRIETFVLDLQKRVMKECDNFSEDVKYWAEYKTGIKSFKPWLEGAEAKSTEGLSKPQTLDEANAMFAVTAAFDEACLKHIKLLNDAEGAANKMTTHKDADVEVSKRC
Ga0193159_10215512	F000048	AGGA	MSKFLNDAEGAANKMTTHKDADVEVAALKERYNKVKAVSDGWMKKVDTLVKEWKLLDNTVTELNSWVAKDRGAEGEQQFSLEKMESTLGELKNIFKENWVS