Scaffold Ga0193130_1009537

Overview

Basic Information

• Taxon OID: 3300018660
• Scaffold ID: Ga0193130_1009537
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000589 (ERX1782392-ERR1711993)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1111
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005500	Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193130_10095371	F005500	N/A	GFPTIIAERKGKSSSGKMRSLVALTLVLALAAGDIMLKKKIHQDMMMMNSQAMCWGHGNTMYYKMAMMQALEECQGGHSSSVKPTSPFAQLNKPQNPFQTLPSPIQAKNPFSGNSFNKKPTVNPDSLKSILFSNFDRRKRQADGLIEVTEEDFAEFLGDFSDFKDGVASKMSNLTCVLSKMNMLDADYQVNLKMFTEDFWKDIDMSQTLAAEDPVWRQMLVDGYNDCYDIARSFPQSALNKNPIMKVFGRHMVFFKCTKKVDAHGCGMAQAAHMLETLYGSTDNFDWSSYGLPNNKYERAAMSMKVMYGTSSPEEAFVHNFFYADPMM