Scaffold Ga0192878_1005531

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192878_1005531

Scaffold Ga0192878_1005531

Overview

Basic Information
Taxon OID	3300018630 Open in IMG/M
Scaffold ID	Ga0192878_1005531 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000750 (ERX1789440-ERR1719452)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1848
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Atlantic Ocean: TARA_067
Coordinates	Lat. (^o)	-32.2188	Long. (^o)	17.7054	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001636	Metatranscriptome	659	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192878_10055311	F001636	GGAG	MSTLNYSWNVRGTLNGNFMSASGTTASVDGVADVHGTAGEGAPFDHSTWIWGGLGHYGLAYLQGGHKVNPCEKYPFHMTRHWWGEDGAHIWSSHTVTGAEGAWAGDIACVAEYFKPGGAILGGYVRGQYPSHWVATKRSDKEVDVHGIVTLKLENGGTYTAHVHEYMKFWEPCVAINRHYWKLQYLEAEYYPTHWYHKEKAVADPNWNYGKSPDEKFTFDWELFGTLGNKCIDAAGYGYGSGYRQHHWGKGGRGWGEHGLPNLNWALAWEGHAGLHFFTRFPKGVTNPFHLSLPEGFTIKRHWWGQDGAHWATTHDLRFEGSHFHKRIALVGDGFEPGCFMWWDGNKEKGTWIVKAFPQYALAVPKGDDHIWYRAAFQFELNTGAFYSGYWEMDIHFRKALQPGQMPDPYVVKFFPETWDSKPHYWHFYEREELEQSTYDKA

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