Scaffold Ga0192863_1000109

Overview

Basic Information

• Taxon OID: 3300018626
• Scaffold ID: Ga0192863_1000109
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000790 (ERX1789512-ERR1719180)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5393
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_066
• Coordinates
  • Lat. (^o): -34.9363
  • Long. (^o): 17.9366
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192863_10001094	F104391	AGCAGG	VKGECLANSDPLDQEVRTDLKDQMVNLEHLDPRDLPDTKDPLGWLVYLVSEEFLGLKVQRVEEVIQAFLDQLVLMAEQAKEVNKVLLVLQDPLERLEVLEIQGRQDLLENRGQLV
Ga0192863_10001095	F094857	GGA	VKLVARALLEPLACLGKRAQMDQGDPQAKEDHQELKACQAWRAERDPLVLMDQMDRLDQMDLVGLLGIEEFLVFQAQPAQLEQQANKEHKEKGEILASQESKALKDHLGLLVLLGLLVSVVSEVRRVHQESRELQGWAAGLVTRVHLEQQE
Ga0192863_10001096	F085090	AGGAG	VCQDLLGWLALLDQLASLDLLVYRAALERLDHQDNLEPRAIAVSLAFRVFLDPSDHKDRRDLQAKMERTESQVQWAGAVLQDLMDLWVAWATLDLLDQEDHRARKAREVHLASLVLLGLLALQARATEWTWLP