Scaffold Ga0193133_1002887

Overview

Basic Information

• Taxon OID: 3300018617
• Scaffold ID: Ga0193133_1002887
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000604 (ERX1782236-ERR1711896)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1150
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003869	Metagenome / Metatranscriptome	464	Y
F015105	Metagenome / Metatranscriptome	257	Y
F023367	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193133_10028871	F003869	AGGAGG	MAKRQYKRTHFYSIASMMTDEEVHQVWEIVGNALDRNGFVDADGELSIRVYDETLKKNVINAIDKSLEV
Ga0193133_10028872	F015105	GAGG	MNLESRKANMVYEIASLINDDPLSAPVLIEELVDVMFDEQIDHIEDVIVNHFGVEVYGEETVELLSQQ
Ga0193133_10028874	F023367	GGAGG	MTKTKFIFEEKFISYANVEIYAENEEDARLQFQNGNYQYYDVSDFTEGHELISVKEEEPVNYYQGA