Scaffold Ga0193141_1002895

Overview

Basic Information

• Taxon OID: 3300018588
• Scaffold ID: Ga0193141_1002895
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000538 (ERX1782191-ERR1712140)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_022
• Coordinates
  • Lat. (^o): 39.814
  • Long. (^o): 17.4138
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003184	Metatranscriptome	502	Y
F008676	Metatranscriptome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193141_10028951	F008676	N/A	MGSVLRECEGEGXEXLSAAANTDNNKMAAGGAWRRPRMKVYDYNQEFGGNYYQPMIQYINKKDIYGPFHKRTDVYLPHSAEVTSDKYTNMRYQDKSSAKHNLDEFLQNAYSKQIKELNGTTVKVLNTRMRKETTNSLLTPKLTSKLIRDHYVKLIHRLALREVMDLPPFL
Ga0193141_10028952	F003184	N/A	MKNIVSSRRQPHSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKSNNSKLADKQRKHLVMLEACDDEYNYHYKMFGQGAGADRDMKFYAPQLVQDYVNQIRRF