Scaffold Ga0193340_1013148

Overview

Basic Information

• Taxon OID: 3300018584
• Scaffold ID: Ga0193340_1013148
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001758 (ERX1789699-ERR1719170)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 580
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_110
• Coordinates
  • Lat. (^o): -1.9778
  • Long. (^o): -84.5992
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045526	Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193340_10131481	F045526	N/A	CIVQLISTFYKPKMGKEVKRWDPPNAEMPKYPIPLWGPTSKYIKVGENNGPVYPAKRENGYAEAAPKLEVPGEPTSLSYPVSKIEKSAHGYKCDVIQDIKMPKLFVGPKLIEGDGKNGYIPTKPLSTPYPQINAPVFNGVEASNHFSPQPVIKIDAEPLMSTPMFPVEHGSKYTTQEFGCSGKGLVIHREKVL