Scaffold Ga0188842_1002396

Overview

Basic Information

• Taxon OID: 3300018574
• Scaffold ID: Ga0188842_1002396
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_3p0_dT
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1010
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011303	Metagenome / Metatranscriptome	292	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188842_10023961	F011303	N/A	RVHAPLSKMPALTETQVATWVEDFMEAMQSPPDWKRMQEMMNKRCTVEMPGEPKCKKFEDWKKKSEAFLASFKNAKRVIPKGAKPIIVQSKKDEVEVIYPEQCSFTWTAGLADAYPNCTLASGDKSKIFIYNRVLLNAKGECNYFQPVFSSNDFKGADRAEDTDSLLDQIYQEFNAGNARFGDDMKVEFPVVGKMDKAGMFELFAKFGGCQRAMQKGCVPVNMSTGKDEVFEGIVPCVYSFKWSSALNDVFKLELADGADVVLSSYDCLKIKSGKVISFAPHFDPAANIKPAGKSGAA