Scaffold Ga0193022_100613

Overview

Basic Information

• Taxon OID: 3300018538
• Scaffold ID: Ga0193022_100613
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002101 (ERX1789665-ERR1719366)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1230
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_147
• Coordinates
  • Lat. (^o): 33.061
  • Long. (^o): -66.5435
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020840	Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193022_1006131	F020840	AGCAG	MFRVFFASFVYTACAFSGERRVHFLSALDAPDEEVMGPNMNFDELSTTMKCIISLTIQYMVVFTGLGIVRSYLDFTKVPHESSALCKALKSASETMFYAPMVCMMFVGFRMRVLQLSKGTGNPQDWVRMSMQAVTYSILANTLLVLFVPLFTAKEVKTTKEGDLDPEAKGPFENSALATIFNVVRYLTFLGLYIGFGAVCVGVFKYEPPAGVWDGPIPPVSPAVACTMLLSCTFFFIYLLLAISRTYSQYAGGQLFTSSFETVMLRAADTLAMAPMLCVLFLAARMRALQMDPIGGNPQRWAQRCFYAASYSLIAQTIMAAVVPLCLKAKALPKDDKTVEGDVKYEFEGGNQGMLPKVLTVFRFIIMLSVYACTTAVVCSVFTIQHPDGKELTPPLS