NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193211_100197

Scaffold Ga0193211_100197


Overview

Basic Information
Taxon OID3300018511 Open in IMG/M
Scaffold IDGa0193211_100197 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000074 (ERX1782325-ERR1712229)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_041
CoordinatesLat. (o)14.5536Long. (o)70.0128Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000287Metatranscriptome1370Y

Sequences

Protein IDFamilyRBSSequence
Ga0193211_1001971F000287N/AMGESGGGSLTGPRLHRFQVLRTLEAKMTAGGAWRRPRMKVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKGGNHKLDTKYRKHLAMIEACEDEFNYHHKLFGQGAVDRDFQFHNPQLVKDYVNQIRRV

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