Scaffold Ga0066669_10237015

Overview

Basic Information

• Taxon OID: 3300018482
• Scaffold ID: Ga0066669_10237015
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1431
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001577	Metagenome / Metatranscriptome	669	Y
F018039	Metagenome / Metatranscriptome	237	Y
F024169	Metagenome / Metatranscriptome	207	Y
F033582	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_102370151	F033582	N/A	GLVMLAAVSAVAFTTGYLPPDSSASHHEDNDTTNVLQLQKTGGAKALTRQEISNEVFRELASSGC
Ga0066669_102370152	F024169	GGA	MKTEKLHEGWRALWLAIAGVMAIMLIWNVVMLSLNGISY
Ga0066669_102370153	F001577	GGAG	MPRFYFNLASTDAHISDDSGKELDTLNDAYEHARKLIHKILFHVGREEAEAWKVVVSNDDHDAQMIIPFSVSHAFSAQRRRKK
Ga0066669_102370154	F018039	AGAAGG	MARNLREVIAAVAAERRAKVAAAYRQKLIALKKKRQLEEAKRVLELDSNLIAIAVIITALPIIAALGWMLTALALGRR