NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066669_10028228

Scaffold Ga0066669_10028228


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10028228 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3272
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026411Metagenome / Metatranscriptome198Y
F027294Metagenome / Metatranscriptome195Y
F041398Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_100282282F041398AGGAGMTKSRTQVAFAICVLSAAVAVFSGAIPVPFLNTGKHCLQVTQPKGVVTLVADGTDPQPPPTPLPWLGVAS
Ga0066669_100282284F027294GAGGLIDVSQTLRAACNPGPSHKTRWEAANMRVFRGFAIALMLALISLGIFILYNSMARRSAAAADSVIAGAVLFSLALTLLYYISRPTIK
Ga0066669_100282285F026411AGGMKGQEQKDSAAPMGTSPAMECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNHYLNLFLCAKHARELSLL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.