Scaffold Ga0066669_10026706

Overview

Basic Information

• Taxon OID: 3300018482
• Scaffold ID: Ga0066669_10026706
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3339
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001481	Metagenome / Metatranscriptome	687	Y
F003919	Metagenome / Metatranscriptome	462	Y
F031185	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_100267061	F003919	AGAAGG	MKSIPPDSYLKDYKKRRSAFLEELIASTPNLTVRAKEFRRWIDENSPHRDDDEA
Ga0066669_100267062	F001481	AGG	MTKPKTWLDLALSPDADWPPHQPVMLTELVAEARAIDWDFATWCCVSGHDANDPEARRMFEWLLAYARREGRAGLH
Ga0066669_100267063	F031185	N/A	MLKTLIIATVLLPRLAIAQQSQQLPQPGGWMASGSYCVPGSDKAPAAIPKKDWCPACRRESGSYCIR