Scaffold Ga0066669_10001951

Overview

Basic Information

• Taxon OID: 3300018482
• Scaffold ID: Ga0066669_10001951
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8210
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011833	Metagenome	286	Y
F016379	Metagenome	247	Y
F042822	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_1000195110	F016379	N/A	MPGYPERFVKLLYGIILAQFIVIAILLAGFSAEYLSNIYFRIWVDSNFPQLGLLLTGQVDALLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLAQSSDLLPNHATRTTIVEVATETPDQVLGELDKHDF
Ga0066669_100019514	F042822	N/A	MLLITIILLIVVFYWRLFVVRDLNLLETVFWIIFPDLASFIPIGLAVRGAKEWPRWGPTLYNFFHTLLVWIPVFAIWSLLSGAVQWPFLGWAGHITADRSVGYYLRASTRRPD
Ga0066669_100019519	F011833	AGGAGG	MKAFIASFVKGQILLFAPQLALILLILYDRVSFYYGAPVVISLAVLWGWFDYSGKAQRRGASVLKKLERLVDDFGWLNFQEGGGAGSEMVVALLDKASFGSSTLTTPQLAMATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKTGTEISETKQSPQ