Scaffold Ga0066669

Basic Information
Taxon OID	3300018482 Open in IMG/M
Scaffold ID	Ga0066669_10000118 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018482 Open in IMG/M

Scaffold ID

Ga0066669_10000118 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18721
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18721

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (86.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F008485	Metagenome	332	Y
F008873	Metagenome / Metatranscriptome	326	Y
F021739	Metagenome / Metatranscriptome	217	Y
F065579	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_1000011810	F008873	GAG	LKQGKCPRSAMTERKKEDEKKPARLAPFVEPQLFLAVEEANRRLKEIMKVTDPTTGLYRSIQRITEVSEMMLRRQDQLRKLYEPSESVRKYLERIRQLVEQLTRTKMDQLPTISRTLIPQLEGEVSGYVETFERALAEKEKEIEALKAELEALKSKTKNQHAV
Ga0066669_1000011811	F021739	GGAG	VDSTPDAVLGILRRYPLDGWREEGNRLVLKDCNISMRSGMAYLTIENAPDIMKRVAEFTSTIRSMRGEIFRVIVGSDSVRVIAGQEALNNFRQSFRPREIISYSPELAEICLLLPFGTERLGEIATAMTAQLTLNRISLVGILVCPPEDIIIVSEIDASRAFESLQCLLREEAQNHSRKARALKNGFPRPDKLREILRLDDSIMSPILAA
Ga0066669_1000011815	F008485	GAGG	LGKGTVQTPSEKAEETLLAMKEFRRYLEGVEKDLSRTSKKFSNREIAQGVGFVAAGIHEALNYLEIVKKVIVKTERVVAKKNIGSEHTTVSTNPP
Ga0066669_1000011820	F065579	GAGG	LTTPARFDAAPAFFLILGIVLITVGMTVGLGKIGDAMVMNNPDAGNLYNPANVSPTVAYAGLVIGVFVAIGSAFIGIAVHKWK
Ga0066669_100001185	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGITPSKKLENQMALGFSLLNCEHTTSEQVIKQLSSIPGFVEASTVPGQFDIVALWQAKTSEEIVKTSVERVSHLDGIFKSETVLAYTPVFKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066669_10000118

Overview

Ecosystem & Geography

Associated Families

Sequences