Scaffold Ga0190271_12381479

Overview

Basic Information

• Taxon OID: 3300018481
• Scaffold ID: Ga0190271_12381479
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 633
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.109
  • Long. (^o): -111.7531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038846	Metagenome / Metatranscriptome	165	Y
F079464	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190271_123814791	F079464	GGAGG	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGLTVEPIKEEDAQDEEESARSAFVPW
Ga0190271_123814792	F038846	N/A	QQLLSDQQLRDASDEQLQDLIARVDLLLRSKGQPGLRLQTPEDEPDIPEPTDPSDPLDDPGTIDTE