Scaffold Ga0190271_10038235

Overview

Basic Information

• Taxon OID: 3300018481
• Scaffold ID: Ga0190271_10038235
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3961
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.109
  • Long. (^o): -111.7531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004784	Metagenome / Metatranscriptome	423	Y
F014000	Metagenome	266	Y
F096823	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190271_100382354	F096823	AGTAG	MKKALTFLMMTIMMVAVTTTISQTHKVYAENKAKDLCSQYDGEWNNGKCKIKNDEDKTDYEDELCDDPKDTKKYPKICKDN
Ga0190271_100382355	F004784	N/A	MEGKLKFVVHGKKDGDKFILEGITNFILQKMDSFDDKTIIVTFEKPVTNTIQLDDDNLFN
Ga0190271_100382359	F014000	N/A	VFLSEIGKVQLKMNAEEAKALLKDRGISVMNMPHGYIVTVSRREGSPSRRIEMDEIDAILALGKITLLAVEDMVGDIIIECSKSV