NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_10170616

Scaffold Ga0190270_10170616


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_10170616 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1797
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054173Metagenome / Metatranscriptome140N
F069064Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0190270_101706162F054173AGGAGGLNSRTRRQQTSDGADIATVQEYAFQVKLVAVVRVRAADEAHARKVVPSVLGSPGTAEIRLVNESNNALGLNATVTVVDFFAKGDSAVLLERKDKKDR
Ga0190270_101706164F069064AGGGGGMQEYLFEVRLVAVVLVRAQNESLAGEVVSSALGSPSTEEIRLANEAGFLMGREATIVAVNFSVDQYS

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