NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10791896

Scaffold Ga0066662_10791896


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10791896 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)918
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026411Metagenome / Metatranscriptome198Y
F027294Metagenome / Metatranscriptome195Y
F080432Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_107918961F080432AGGAGGVDIQKGERWRCQNRVCKSEILVTTSSRAQGGSNPRCSCGEIMKKPYTQPGLRPFESEVEARVKLEASRN
Ga0066662_107918962F027294GGAGGMRVFRGFAIALMLALISLGIFILYNSMARRNAAAADSVIAGAVLFSLALTLLYYISRPTI
Ga0066662_107918963F026411AGGMKGQEQKGSAAPMGTSPATECRAEFIFYARNQSRKLGSVEVLGDYACDFRRPDWAHRWTDWNSGRNHYLNLCLCAKHARELGLL

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