NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066662_10388680

Scaffold Ga0066662_10388680


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10388680 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1220
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003695Metagenome / Metatranscriptome473Y
F014463Metagenome / Metatranscriptome263Y
F029835Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_103886801F014463GGAGGMGNVYVPAAPEKNLGPPGQSSVCGEDLIYISICSGGAIIKISAAERPNFVPGQLIIFGVAVFVLTLVELTVW
Ga0066662_103886802F003695AGGAGGMAQKTDSLAFRFAVVLALAVIVLLVTTWAAPPHPANDTANPRSDAIYRAQHLNLF
Ga0066662_103886803F029835GGGGGMNNLSQPPQPAEPDMALLFLGSFFENLHHAPVRDDAKLDALAMQILDEGPKTLLGLVIRAGAEKWLRRHLWTLAFDSLSPLEQGVCVVIDSAMRYRLRPVSPSLFCG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.