NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10064637

Scaffold Ga0066662_10064637


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10064637 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003037Metagenome / Metatranscriptome511Y
F007915Metagenome / Metatranscriptome342Y
F040037Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100646371F040037N/AIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWASRWLSSLGGIGAFVSFAVAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRHSKAAMTMGRLFPENFGPSLPSSSAPTLRSVRMNEETKQTAEPRS
Ga0066662_100646372F007915N/AMSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLDEIGNGLAQVWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGFFYVSEPDATYAASGLKISSYNTTHFIGLGLIGFTMIVLIALAFYLTRAKSAHRALPKQDPGSTN
Ga0066662_100646373F003037GAGMWVEFKCPLCGKDLDDDKTMANFLVCGDSSHGLLRFFTGDGCYFTTNEQVAEELMKKGKRVHIVDPKEFLGNQTINLE

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