Scaffold Ga0066662_10008773

Overview

Basic Information

• Taxon OID: 3300018468
• Scaffold ID: Ga0066662_10008773
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5164
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F019106	Metagenome	231	N
F035244	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_100087731	F035244	GAGG	MSKPASVNFPRINLISILAGALALASVFLSWWGIDASGFGSVVSPRWTLWNGPSMDSIFRGSAQAYPTLTSTSPIIGALVVISALLALAGSFTRNTRPLIGSFILGVLTSIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFKIGFYLYLVAGSLTLVGLGFHRIFHKTTPT
Ga0066662_100087732	F015579	GGA	LGSDSKKPPRPRHLFSFSGQSKQPETSSTPRAANVTRDDILNSLTKHAHPEQGPAEEASEIEESAQFQDSNQTAVTLGTRKRGSARGALVVFLGGFLAVWLYGYVTGAYEIPYLKGVTESPEVQIGVQLVVSNPIAFGAVSASVLLGALYLRHRKKN
Ga0066662_100087733	F019106	GGA	MVSQVPLLTLARLLVLIGGVVLLIGGILQAIDIGGLTDFNTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKI
Ga0066662_100087734	F012334	N/A	MSSKRPVELGREARLFLLFLSEINLVTGALFFVYPNLVIDLWPWPVKALAMRFIGAIFLAITFGCWSALRAKIWQRAKILALVGGAFFGITSIVSTVLAASQGGGYGISAWTGYFLAASLGNFYLLYRYRWSRRPQDRLGGGPSWTVARWFFRIQTIVVGGFGSMMLLLPDVAQHQFWPWLVATPTLQMFAGLFLATCLATGWASVQTDIGRIRVLLPLDVIFPSLALLAVGIHWDVISSQSPSALVTGVWVFIYAFVAVGSSYLYFSSRK
Ga0066662_100087736	F017278	GAGG	MSEKKNMRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQAKLLRTYKKFLTKQVDFIEKRLKQAE