Scaffold Ga0066662_10002814

Overview

Basic Information

• Taxon OID: 3300018468
• Scaffold ID: Ga0066662_10002814
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8251
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006340	Metagenome / Metatranscriptome	375	Y
F007853	Metagenome	343	Y
F015711	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_1000281410	F006340	GAG	MGDIRLPGVRGTSTSRYVALVAVLTALFTAYGYVSSIELRAVTRSLDLFFLLPAFFAILVSLTGKKWGGTILGTIIGLIFLGTPSAAGNFSPHITASVVVNGLVFDLYLQRSDSSLLDPSRKHLVVAGTLGNLAMAPAGLLVLQAVFGPSPAVIWAIALIGDTLVGSAGAFFGTLVVERVKGVQARRVLEAKSAVRVRV
Ga0066662_100028147	F007853	AGGA	LSKSSPAEQEFLESKLEKALDDAWSKVNIALDKTTKSSADVAMGIWFAAEALEYSSLLFNLTYALEDVKAVVKLRKGEAPLVLVKDSMELLKQVREGRHGSTTDAYVNLRTAADYLKVAHLDHVKKSTKKRG
Ga0066662_100028149	F015711	N/A	MSNEDRMNNTDPQKTRGHSKQVGLLLLGVIVLLLSWIAVTYFHVAYLLGYLTGIFTPNGSILRVTLIAALGGFILSIPIFRSLLREDKTSQVRVQPIPQYRSPKAHPLFMTSRPARDANFVIRKTKNRGRISRNRAGERLPPSYQE