Scaffold Ga0066662_10002329

Overview

Basic Information

• Taxon OID: 3300018468
• Scaffold ID: Ga0066662_10002329
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8915
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009672	Metagenome / Metatranscriptome	314	N
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_100023292	F009672	AGGAGG	MAGMSVRLLDTTPRWLRLTLGCSAGVLVATGIGFFFGQISQFDITPFTLLLHLALALAVSSWILNLRIRISPDRKPLLGIGVAVVVGSIWSSIQQWIGYFQTGVVSDIMLVAGAALMDVAGGCVIYTLFHLNILKK
Ga0066662_100023298	F022852	N/A	MRGLTVTIPYSVRISRELLDEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNGETSLQKVTVAAYPKRMHDQTFQR
Ga0066662_100023299	F023823	AGG	LGDEAKNNFDRALVDSVSAALDALGPTVKESIFLLLQRRNSISPDQIPKLVGEFVKALQDVLGPTSRVVEKLIIAGLIARKQVPANIAQGRNLLEVVGSVRLSQVSQS