Scaffold Ga0066662

Basic Information
Taxon OID	3300018468 Open in IMG/M
Scaffold ID	Ga0066662_10001044 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018468 Open in IMG/M

Scaffold ID

Ga0066662_10001044 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12470
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12470

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005263	Metagenome / Metatranscriptome	406	Y
F021285	Metagenome	219	N
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F088687	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_1000104413	F021285	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWFVTVVVVYIGVPLLIWSLLVDRLAFMVLRIICRLRESSGHQYYFERQVGKPGVSRRLLRDIRVLVFVFFLS
Ga0066662_100010442	F088687	GGAG	MSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0066662_100010443	F030030	N/A	MSIGDTAYETLANEARNRDVTVQQLLRAVVVPDWIKQNADGQPSGENRSNLIRSSIYGTDSRDSRMLVSPVSRLRR
Ga0066662_100010444	F042845	AGGAG	VETRKWKAFLRMNGETTLDTSQDILTEFKAMVEYLKFIGVDYSMVVQVEAGQKDRSQSLALEQTPRRRGLGQVGD
Ga0066662_100010445	F046962	N/A	MEEIANLGYPSETTDQSTPQDTMTDDRLKDLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNSLVEAGSRSV
Ga0066662_100010448	F005263	N/A	MILAELGKSYNNAILSISQTPFLERRTRRTFTIDPDVSEKIDKLVGGHNLEVNVLVNKAIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVEEAREMGTQNGKDTVVEFILYYFRKFDLDSVLKTFEMIGAEYANAYIYSEFGDRDSRTIILRHSMGLSASAYYGASFKALCDRLGVRCELEESEDQMICKIGSSSMLKTIAPKTFKEQLAKQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066662_10001044

Overview

Ecosystem & Geography

Associated Families

Sequences