Basic Information | |
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Taxon OID | 3300018466 Open in IMG/M |
Scaffold ID | Ga0190268_10046277 Open in IMG/M |
Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1689 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Arizona | |||||||
Coordinates | Lat. (o) | 33.5944 | Long. (o) | -109.1397 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002196 | Metagenome / Metatranscriptome | 584 | Y |
F003251 | Metagenome / Metatranscriptome | 497 | Y |
F055487 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0190268_100462772 | F002196 | AGGAG | MSRAAEDGLALLEAAQKLHAERHGAQTFLPGTYLSFLEAAKRAGIRSDRQRYYDAIEDLEYEGAIEWDKSARYARGDKHYLITQRGLKMLREPL |
Ga0190268_100462773 | F003251 | AGGA | MQTRTYTTEVAAKKAAARAYRPAIVRLPNGRYACFQAGDALPQGARAVSRWGTDRWRAFE |
Ga0190268_100462774 | F055487 | GGAG | MAEQIPEAWIGQEVTVYFGLEGYRQPGILESVSERGIVVQSGQGGAEEHVFWYPHTSVLRLMRGRPRGAEVR |
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