Scaffold Ga0190268_10000242

Overview

Basic Information

• Taxon OID: 3300018466
• Scaffold ID: Ga0190268_10000242
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7023
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 33.5944
  • Long. (^o): -109.1397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012397	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190268_100002421	F012397	GAG	LNRILIPVILVTTFSLLSAPSLAFSEIKDEIKVTPPLNWEPSPTNNSTTMIWFQNSTQSVLAIIKAPDNLVFPLFLVGPFMTEYLKHKGILESADQLTFGHSNHGYRYLLNLSSPSKLLNSSSGIIPENDFLRKIPQGYDVPFKGMLILTQKQNELYAIIFLNPKEKFDSILNEIQPTLDSIQLTSYTAMPN