Scaffold Ga0190269_10424783

Overview

Basic Information

• Taxon OID: 3300018465
• Scaffold ID: Ga0190269_10424783
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 832
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 33.5944
  • Long. (^o): -109.1397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F001935	Metagenome / Metatranscriptome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190269_104247831	F001079	N/A	RAYRQRADVLMAAAPPFVSYSTMSEAVVPESDWPSLYASLQAHKAHVQEYPGCQKLEAFVEPEGADFRLHCYTTWDTPEQLQAFLARGYTFERMLADVASLKAEPPRMMEKIF
Ga0190269_104247832	F000280	GGAG	MADEPGQRPGRPLVGYRDVGEDVRHTRGTVIRAWVILAVIALFYLGWTLTVYFLEPGLR
Ga0190269_104247833	F001935	AGGGGG	VYIKHVTSLQFLTYVAFFAVLLAAMFRFVPGRSPPVREEPYPEEELHAHDRKVAKYFLAGGLFLVLGSIHMALKNLPWVADYLARTGYAGHLVRDLSNT