NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10614821

Scaffold Ga0066667_10614821


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10614821 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005798Metagenome390Y
F014602Metagenome261Y
F053480Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_106148211F053480GGAGMNGGHFDGRIEKRLPTSVPVYLASLDEPRSRERTLTENVSPHGARVISQRFWQSGEESLITPLTGEFRQVGR
Ga0066667_106148212F014602GAGGMIDSWTKKSANSKTVTLKIEGDRKSGFVYSAGMAGRDIKEITGSLKVLTREDVEIMFASYVAGR
Ga0066667_106148213F005798AGGALSTTLRQVGADTEVEKLRRKVELGNKMKHVPALHLATAMALQGMTKEELEALKLRIEKKG

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