Scaffold Ga0066667_10179396

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10179396
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000703	Metagenome / Metatranscriptome	928	Y
F009517	Metagenome / Metatranscriptome	316	Y
F032795	Metagenome / Metatranscriptome	179	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_101793961	F009517	GAGG	MSRAQDYTRQLTDQQLASLNSLNQQFLGQQQQVGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDALQQSAQNRLARTRNSSGFGALTDDI
Ga0066667_101793962	F000703	GAG	VLIREYTESDLEALRSIHAAQGFDYMLPDPRNPLFVTKLVLSDVNGAPGFSPASSCAEATQIESTPRAGNCGILGAALLRLTAEAYLFLDPRAGTPRERWQWLLALHEAARRDAWQRGLEDVHAWLPPPIAKKFGRRLEHLGWRRDDSWTPYSVRLEAK
Ga0066667_101793963	F106044	GAGG	MPITTQNASWDFNPADTVALSATFTFDLNDPNDSQAVAAVLTTLQGRTPHVTLSQTDNATISVSVTI
Ga0066667_101793964	F032795	N/A	ASRNLYVQLGNQTLFWRAYSQYIGSQPSAPVTFGSPAIAVVGGGSSGPAPLPSSGSGVFPNRVPRGANGFGVHPGSRIVRQALL