Scaffold Ga0066667_10030840

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10030840
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3010
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003695	Metagenome / Metatranscriptome	473	Y
F004041	Metagenome / Metatranscriptome	456	Y
F015902	Metagenome / Metatranscriptome	251	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_100308401	F004041	AGGAG	MAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQALQQCNRLAQRYPIHEWGNTQIHLYRTCMAQRGQQE
Ga0066667_100308402	F015902	GGAGG	MGKVLFSLAFATALLGVASSEASAASSFVCQAVGPRSVGYGRAYFVADAKWQALIRCERYSGICIISYCVPAY
Ga0066667_100308405	F003695	AGGAGG	MAQEPDSLAFRFAAVLVLAVIILVVMTLAAPPCPANDTAALIPSSDPIYRAQYLSLY