NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10011894

Scaffold Ga0066667_10011894


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10011894 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4241
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001545Metagenome / Metatranscriptome673Y
F001681Metagenome / Metatranscriptome652Y
F004205Metagenome / Metatranscriptome448Y
F006201Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_100118943F006201AGGAGGMNPEEKVLLTTAFEALGPERVTRGLKATGHRWNDCFLAIATYGEPDALAREMEKSRRKKHVVGALIGVPVQVVNEVVRLWDHDEQGFRALVAEWLELSRAAVPTAPAATAWAQP
Ga0066667_100118945F004205GGAGGMEAHVTSQSQSFRLVEKMEQASIHHGQEIRADLPKVRVLALAGGEQGQVLFCNLGPIRVREILNGGDDRPLPTNVRLEGLAVVASGTYDILNAFVSSNGDLRLVVDDRTRVVPVASAAGAAVV
Ga0066667_100118947F001681N/AMKTLRLQRDPDGFFLWHPDYAPWIVGRRSLGANPNDRAFFDPNAGDIVWSSRDGMKDYEMDEVAARHLVGELVEMPQCESEREVEDWFLERGFKVEWI
Ga0066667_100118949F001545N/AMPRDIDVVGVWHGTPYQVASVSSTADGVIVACGPAGRHTTYPKGGHRPTKDPSSGTSTWYERQVLADVTLAQPLQVIAFSGAKPPAWAKPYADRPSHDSFTFQAQADGQVRLALVGVKEADDAVIVVTKQAATAPRLFRRYAPNVLLWTV
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