Scaffold Ga0066667_10010370

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10010370
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4451
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009437	Metagenome / Metatranscriptome	318	Y
F015942	Metagenome / Metatranscriptome	251	N
F016044	Metagenome / Metatranscriptome	250	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_100103701	F015942	GGAGG	MHKYVGFFRFGLFSMMAAMLTATPSAKAESYTLPGESSKPSAEEFIGTRGLVGIYYGHLPRDGHPRQKVTLVLLADPESGAPKGYVLERIGVAKMPNARFITKGSWKLIKDPNRPAAVIYELDSEAPSELRDFWEVDKSTLLVLEKDLRVRRSGFGDPYTVAYALYGLHCNPGQRMRDCSHE
Ga0066667_100103704	F016044	GGAG	MGLALRPTGLNPPADKDRSGYTLFSGEFAVGRIYEERGAPADVQWFWAITGIFGAPTDMRMDGHAPTLESAQAQLGESWRKWLAWAKLAEIEG
Ga0066667_100103705	F009437	GGAGG	MSYASYCQDQATACARRARLASSPEIVAYCRNLQFRWLRLAAQAQATGGALGRESAPAASLGDTTAATCPVEYGKRAGELIARGARSLHSTLRQKKFEAERCVR