Scaffold Ga0066667_10008832

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10008832
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4711
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F015579	Metagenome / Metatranscriptome	253	Y
F035244	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_100088322	F003305	GGA	LATWEEPRELDTDNEAVVSLYDGIKKILEKQPKPKAKPSSGIPREARHILRCGRILKVDIERKLVVITVMKTDGELHQLRIEANQD
Ga0066667_100088325	F035244	GAG	MTKRGRANFPGINLISLLAGALALASVFLPWWGMDASGFGSSVSSRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTWNIRPLIGSFVLGVLTPIAYLGMVSYAVANSCNGQSNCLSGPFGTETFFGITLNWGFQIGFYLYPFSLEL
Ga0066667_100088326	F015579	AGGTGG	MTGYLCPKPRARQYVYAQIERSLENNGGEVHLGSDSKKPPRPRHRFSFSGQSKRPEGSSMPRAANVTRDDILNSLTKHAHPQEPEQTVPETEEAAQFQGPNETAVEVRARNRGSARGALVIFLGGFVAVWLYGYVTGAYEIPYLRGVTQNPAVQVGVQLASSNPILFGAVSLSVLLGAIYLLHRKKN