Scaffold Ga0066667_10005042

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10005042
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5691
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F100464	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_100050421	F004426	N/A	TIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGEQVKPEELRGSTLLPVSIATEFGRITGEIMIMPISKVRAGISEAGLSVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSSQWRVFEKAMRGFVKNRVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLNPRIAPKINMVPGKTRKEIVLGERKHRKGKKRNREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA
Ga0066667_1000504210	F100464	N/A	VTVSVPAPVGVKVTEQLPTFRLQLAVGLNEPLAVPAEVNLTVPVGVLAVPVAVSVTVEVQVEPLLVSTDEGVQLTVVEVERPITVSVNDWLPVLVL