NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10000638

Scaffold Ga0066667_10000638


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10000638 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12128
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F054748Metagenome / Metatranscriptome139N
F062629Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0066667_100006381F062629N/ALFIASSLYYLEQGRILLAGGLGFLAGLARPEAFLVAIPFLLKGIFEDQKFRKLLAGFTVLASVPAFGVYAYTQTGNILAPFQSEATGPKCTILCFFNNPVYQVANGVLPYTINFVTMILAVIFVAIPLIRGNVSSKLFPYYTWAFVLLAVVFYSGEVRSFARFALVVPPVFWAQAEYSALHPRFFRGLIVVYSVLMCLATILWVNWYPML
Ga0066667_1000063810F054748GGAMTTEETPRIDEPSKRLTEMILKGEDQESARIASEIVGGRSQTNDTVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHRFEKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKNLKPDVLAIPLVTTSAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLGILSRIAEILISR
Ga0066667_100006389F005560GAGMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPFTIVLFTPYIVESSWFISAVASASNSIPSLKETAVNFYTWSFGLARMDYSVKFVVSQLSAAFSSTAVSGLLLWRVKGTRNLMLALRRKK

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