Scaffold Ga0066667_10000600

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10000600
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12379
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F014275	Metagenome / Metatranscriptome	264	Y
F016870	Metagenome / Metatranscriptome	244	N
F020983	Metagenome	221	N
F023196	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_1000060011	F020983	GGA	MRWDESPRFLLIASVASAIVSAAFGLAAIWDHPGYNVAAAALALLTAILGCRAYERSTHRRLGRLQREHLVLRLRQLPSPIEFRVVAVPDAEAVRFAQELLDVFVEGGWPAHGVYRALPANAASTGLFVAVQDGNFPSEEERRLLLMLSEFGMYAVKSTSPKLTHPKALELLVGHRPTM
Ga0066667_1000060012	F023196	N/A	MAGARRYRLVGAWALAQIVAGCLLIFVAALTAFAVLSPWPADIVSRVPAEWRARLAPAAIAAVSLAVILGGSLVLSGQMLLLLRDIHRHVARLDAREARRGRDSRRSPDPRDSTSRLLPR
Ga0066667_100006003	F013098	N/A	MRLAWFRAMTVAAIVLGGCSIAPFVGYRNGPVTLYIGEVRHVCAAGGSSNRGCTLRYPNGRVEVYCADGDYECLAHELRHVVDPTWEHDLDYRSVSAR
Ga0066667_100006004	F016870	GGAGG	MYDRTIDRMSDGASEFLVQFYLQSPKLSVTVLLAAWLILFFTALWYFVLLPATSNNLANGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRSSQTGQLAVADWRSDPTEHRPGGRFALLVEHRSDKQTEVYSTLAQRIRVKPRTGYNVRFWAKVDRMEHDGDLWLSPSGSSVAWDEPKIEVAGAGKGWQFYRLDFNSGDRADLDIRFVAEGPLKVWVDDVVVSRVPAGETWVEKVGSWLGSLWAILR
Ga0066667_100006006	F014275	AGGAGG	MHKLVVKLDRAGAGKHVSRWKRQMDQSIRRAVKASRRAIHATNHSASPHKAESMMLRTKKAVVKAAMGL