Scaffold Ga0190275_10063174

Overview

Basic Information

• Taxon OID: 3300018432
• Scaffold ID: Ga0190275_10063174
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3145
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.2639
  • Long. (^o): -110.8632

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001245	Metagenome / Metatranscriptome	737	Y
F016872	Metagenome / Metatranscriptome	244	Y
F019060	Metagenome / Metatranscriptome	232	Y
F020315	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_100631743	F019060	GGAGG	MGEKRQERTHKRAEELSKLQQIHAHLAAVEQMAASYPEDHSTRLVIESLELYKARTVVEEDIVRLRGSLGYGTEGYGTQ
Ga0190275_100631744	F001245	AGGA	MSDKALGMLKHMRKQILGKPAPYVMVHGAAISIGVKPGGSECHVLVDELLQAGYLQRYPSPSLTAHGLYRLTDSGVAAADEAALIAARRRARIDEER
Ga0190275_100631746	F016872	AGGAGG	MHDDQTAQDATRLLGAFSTNHAEARMVSPYGLDRPFYPSWADADQAGLNRVRRDAAIRWLVEKNMLEREGEPENPLGTGEGFYSKYGSVFRFTDAGRELLEEVRERRQA
Ga0190275_100631747	F020315	N/A	AERWEEGFVDEKSLQLLKVMREQLGETAASRTVDAGAAAKSLGMYPGTLERSLLYLARAGYIEEYADRAMSSRDGMFLITLRGIAAIDNA