NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10046564

Scaffold Ga0190275_10046564


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10046564 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3597
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004746Metagenome / Metatranscriptome425Y
F018130Metagenome / Metatranscriptome236Y
F018165Metagenome / Metatranscriptome236Y
F035469Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_100465643F004746AGGAGGVQANEARRGMVVRVRKGHWKSQFAGMRGTVQHLWGAPEHAAVDVLLEDGRSELFWLPDLFVVDEGIAV
Ga0190275_100465644F035469N/AVLVGREHTNGHEGTELPFDYYLERDPDQLILRRSDGSFVAAFNVAGVSLFEVELAVWEDA
Ga0190275_100465645F018130AGGAGVVQKVDAKEQSADQQPRCGIDKIREAERACMRLGKVHLDGSVLCVRHAELLRLEDHSESILGEVFEMEQWLESVDGRADESRVRRAEHHRNDLVEQIRSNRTRIELIRDELLKDHEGTT
Ga0190275_100465647F018165AGGAGMREDQSVAEMANEFLMRQAKVRADRTGEPIEEAMEVVLDTEAGKQLRELRDGPHSEEGVEETQLDAARERARELVEDRGKRLGKAPGHPAHG

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