Scaffold Ga0190275_10046564

Overview

Basic Information

• Taxon OID: 3300018432
• Scaffold ID: Ga0190275_10046564
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3597
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.2639
  • Long. (^o): -110.8632

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004746	Metagenome / Metatranscriptome	425	Y
F018130	Metagenome / Metatranscriptome	236	Y
F018165	Metagenome / Metatranscriptome	236	Y
F035469	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_100465643	F004746	AGGAGG	VQANEARRGMVVRVRKGHWKSQFAGMRGTVQHLWGAPEHAAVDVLLEDGRSELFWLPDLFVVDEGIAV
Ga0190275_100465644	F035469	N/A	VLVGREHTNGHEGTELPFDYYLERDPDQLILRRSDGSFVAAFNVAGVSLFEVELAVWEDA
Ga0190275_100465645	F018130	AGGAG	VVQKVDAKEQSADQQPRCGIDKIREAERACMRLGKVHLDGSVLCVRHAELLRLEDHSESILGEVFEMEQWLESVDGRADESRVRRAEHHRNDLVEQIRSNRTRIELIRDELLKDHEGTT
Ga0190275_100465647	F018165	AGGAG	MREDQSVAEMANEFLMRQAKVRADRTGEPIEEAMEVVLDTEAGKQLRELRDGPHSEEGVEETQLDAARERARELVEDRGKRLGKAPGHPAHG