NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10031758

Scaffold Ga0190275_10031758


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10031758 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4247
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004425Metagenome438Y
F010385Metagenome304Y
F059713Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_100317581F059713AGGAGVDIVQGERAETELTAFIERRSRKGEADPEEREELWKESVRRYNARRREVNRLAWCDYFSHLAGSLRARA
Ga0190275_100317584F004425AGGVNLLPAIRDLYSRHPEMYSLEAWELQSALFVLGYTDGLAPEAEIAAAVEVARGDYPQWRA
Ga0190275_100317587F010385GAGGMDTTESSATPAHPSTEEHNHQDERPHACNDGWITLGQIVVDDETGEETEEFALYLCRRCTDNA

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