Scaffold Ga0190275_10011522

Overview

Basic Information

• Taxon OID: 3300018432
• Scaffold ID: Ga0190275_10011522
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6576
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.2639
  • Long. (^o): -110.8632

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010385	Metagenome	304	Y
F057149	Metagenome	136	Y
F059713	Metagenome	133	Y
F086692	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_1001152210	F057149	N/A	MSTCAGITREGRRCTLSAQTSSGMCWLHDPARADQRQRYASKAARSKGNKEVADLKEEIKNVIKDVKAGDLDRNDAGVMIQGYRALKDFIALERQVRETDELAAELEELKREYGAA
Ga0190275_100115222	F010385	GAGG	MDTTESSAPAHPSTEDHDHQDERPHACNDGWVSIGQTVIDPHTGEEAEEFALYLCRRCADAK
Ga0190275_100115226	F086692	GAGG	MSGSERIRCAACKKRIAASEPDIELRRLDDGRRRYYHTRCVAATFETVARAPDVWLMTVRHVKEMAN
Ga0190275_100115227	F059713	AGGAG	MDVARSETVEAELDRLIVKQSSKEPDPDEREELWKESVRRYNARRREANRLAWCDYFSHLAGSLRARAEEYEGRAKRLMQDDQEIGEAS