Scaffold Ga0066655_10044619

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10044619
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100446194	F025249	GGAG	MSFLSSRFNASSEENRDSSTGSYAGVPPPSVFGIIVVGLLAGLVVGLLSGPNFTMQGFFLGFAGGALITAGLYFYTSQKSRAAR
Ga0066655_100446195	F028763	GAG	MNEQARSWRRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKEAVT
Ga0066655_100446196	F014601	AGGAGG	MSGSTGEGRRPSPVPRAVLAGLIAGIAAGLVSYYVINSVLGLIIGFIAGAIVGSRTVLLMNRAREQDE