Scaffold Ga0066655

Basic Information
Taxon OID	3300018431 Open in IMG/M
Scaffold ID	Ga0066655_10023685 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018431 Open in IMG/M

Scaffold ID

Ga0066655_10023685 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2900
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2900

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002975	Metagenome / Metatranscriptome	516	Y
F005263	Metagenome / Metatranscriptome	406	Y
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100236851	F002975	GGA	LIDPLLELKGLRFCEDCYPDVKREHAAASMSDKMDRRQRVAFADDSSDENLRGSIIKGKQALAVRENDFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0066655_100236852	F030030	AGGAG	MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPRQNGSNLIQSSIYGGDSRNSRMLVSPVARLRH
Ga0066655_100236853	F042845	AGG	MNGETTDDTSQDILTEFKAMVEYLKWIGVDYSMVVQVEAGQTERSQSLALEQTPRRRGSRQLGD
Ga0066655_100236854	F046962	N/A	MEEIANLGYPPETPSQTVPQDTMTDDQLKDLLAELISSSASLSVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNNLGEAASRGV
Ga0066655_100236857	F005263	N/A	RQIVHIRVNMILAELGKSYNNAILSVSQTLLLERRTRRTFTIDPDVSEKIDKLVGGHNLEVNVLVNKSIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVEDARKMGTQNGKDTVVEFILYYFRKFDLASVLKTFELIGAEYANAYAYTEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVTVELEESDDQLICKIGGARSLKIMAPKTFKEQLAKQAVERRVEP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066655_10023685

Overview

Ecosystem & Geography

Associated Families

Sequences