NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10023324

Scaffold Ga0066655_10023324


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10023324 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2918
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002984Metagenome / Metatranscriptome515Y
F017980Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100233243F002984AGGAMDSENRMSVRRSLIPLALAICATAAAVSCGDPSPLGVAFPAPAFQRGGRWTPHDTTGAGLVACLQTYDSVTQVIGPAGGLIAVGHHYLWVDSMALSDTVSITAVAPADTVRWVRFQPDGLRFRTNGAGWSALLYTSFSDCGVPTVDTLRIAQVTDSLSIIRYLSPPESTWIRVRKKAWSKGNQYVAGVLHHFSQYAVSW
Ga0066655_100233244F017980AGGMNSINRSSVRRWLIPLALLAGASAAASSCGDPSPVGVEPRLAAQKVGAGRLLSCPPAAYDSVTQVIGPAGGLLVVGSHVLVVDSLALSSPVSITAVAPSQSVNLVRLRPEGLKFKPGVHGIGALVATNLDNCGVHPNQVLQVVNVSDSLRILGYLQAPTMTDSAVVVKYKTYLGSLWVGGLLHHFSNYAVAW
Ga0066655_100233245F002984N/AMTTTPVARRFPLALIAGAIAAAVSCADPSPVGVDLRGTGPAFEVVKLPADTGLVRCGQTFDSVTQVIGPAGGVIAVGHHFLWVDTMALADTVSITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILFTSYKDCGVPTADTLRIAQVTDSLGILGYLETYVQIRRRSWSQGNQYVYGVLHHFSQYAVSW

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