Scaffold Ga0066655_10023324

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10023324
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2918
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002984	Metagenome / Metatranscriptome	515	Y
F017980	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100233243	F002984	AGGA	MDSENRMSVRRSLIPLALAICATAAAVSCGDPSPLGVAFPAPAFQRGGRWTPHDTTGAGLVACLQTYDSVTQVIGPAGGLIAVGHHYLWVDSMALSDTVSITAVAPADTVRWVRFQPDGLRFRTNGAGWSALLYTSFSDCGVPTVDTLRIAQVTDSLSIIRYLSPPESTWIRVRKKAWSKGNQYVAGVLHHFSQYAVSW
Ga0066655_100233244	F017980	AGG	MNSINRSSVRRWLIPLALLAGASAAASSCGDPSPVGVEPRLAAQKVGAGRLLSCPPAAYDSVTQVIGPAGGLLVVGSHVLVVDSLALSSPVSITAVAPSQSVNLVRLRPEGLKFKPGVHGIGALVATNLDNCGVHPNQVLQVVNVSDSLRILGYLQAPTMTDSAVVVKYKTYLGSLWVGGLLHHFSNYAVAW
Ga0066655_100233245	F002984	N/A	MTTTPVARRFPLALIAGAIAAAVSCADPSPVGVDLRGTGPAFEVVKLPADTGLVRCGQTFDSVTQVIGPAGGVIAVGHHFLWVDTMALADTVSITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILFTSYKDCGVPTADTLRIAQVTDSLGILGYLETYVQIRRRSWSQGNQYVYGVLHHFSQYAVSW