NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10018742

Scaffold Ga0066655_10018742


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10018742 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3185
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100187421F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDAVLLPYANSAYRKLQRMLGNAGGGGFIQDDALLVVTAVAQPDTSLQVSITDATASPNQLPTDLLVPLKIWERPNGSTDDFLEMVDLTRHGGLPSRVQDITLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAPEAMAYATAALAGWAGGSPLAEEWHDAAADAIQDLISAVVPP
Ga0066655_100187423F000512N/AMIRVVRETHDTPESVAHRLAGAGGANRLGEPNYRAVWGWNRLAWIGGKFEDRDEHGVLLRERMELRLEPKYPAVNRWHIERWMPPETYGLPPSWYAQTVERENGISIPALGPYPSRGEYEHCFTLEGPHGEFIQLAPTIAEHIARAIEWSRKFPQSAKRRQLYDREGREERSYENWAYGLLDDAVPAFHKQPFVTVV
Ga0066655_100187424F006480N/AMRRILIGAIALLLCGGISARSKNDPLMFVFLRVDHGQDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCASSLREHDAIVETKIATVTDLVLDCGAQKFVVKTIDFRPAAR
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