Scaffold Ga0066655_10015591

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10015591
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3422
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F088687	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100155912	F046962	N/A	LEETADVGYPPETPSQTVPQDTITDDQLNGLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQDSPEEAASRRA
Ga0066655_100155913	F042845	AGGAGG	MENRKWKAFLRMTGETTVDASEDILTEFKAMVEYLKWIGVDYSMVVQVEAGQTDPSRTLALEQSPRRREPGQLGD
Ga0066655_100155914	F030030	AGGAG	MAKFIMSIGENAYDVLSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPPIYGGESRNSRTLVSPVARLRH
Ga0066655_100155915	F088687	GGAG	MSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIIMKQNELILRELESRPTTVKSK