NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10007350

Scaffold Ga0066655_10007350


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10007350 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4599
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000531Metagenome / Metatranscriptome1046Y
F015316Metagenome / Metatranscriptome255Y
F017980Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100073503F017980AGGAGMNWNRILVPRWLLGLALAVAVTAAVLSCADPSPVAVVPPALTAQRAAAHGLISCTPLPYDSVTKVIGPEGGWLVASGHVLLVDSLALGSPVSITAVAASDTLNLVRFQPEGLRFKPGTHGIGALVATNLDNCNVHPNQVLQVAHVSDSLNILDFLPSVTGSDSVVVTKYKTYLGSLWVGGLLRHFSNYAVAW
Ga0066655_100073504F015316GGCGGLVVCSQTYDSVTQVIGPAGGLIAVGHHFLWVDSMALADTVRITAVAPADTVRWVRFQPDGLQFKTNGAGWSAILYTSFKDCGVPTADTLRIAQVTDSLTIIRYLRAPDSTWVRVKKNAWSQANQYVAGVLHHFSQYAVTW
Ga0066655_100073506F000531N/ALSSVKDRNRPKQGPVAERLAILLDLFSPWEAISLTYRQFAAEIGPPVTEAAVKKWPQRKKFPADIARLIVVKAQDRGVTGVTLEWLLWGDGETPRKTPRPAPVTLATPTTPQGPHGRSAARIAEALQADLSHNEFGQWSSVEVQRIVTWALKDLARRLRVLRFDMGRTFELTDEWAGQIGLPVRGGESAEP

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