NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10004937

Scaffold Ga0066655_10004937


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10004937 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5370
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007493Metagenome / Metatranscriptome350Y
F026411Metagenome / Metatranscriptome198Y
F027294Metagenome / Metatranscriptome195Y
F041398Metagenome / Metatranscriptome160Y
F080432Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100049374F007493AGGTGGVIGTTTALIGAAVLLVLILVWVRGQSASRHLPAVMDEWLTGQDDLPEACPPEFVSQIFSSRDFEFISRLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARILLQYAQLRLICGALFLLIGLAGLERLRWMALRADKLTQRIGNVLREFESGARSREMDGVQS
Ga0066655_100049376F041398AGGAGMTKSKTQVAFATFVLSAAVAVFSGAIPVPFLNAGKHSLPAIQSNGAVTLIADGGDPQPPPTPLPWLV
Ga0066655_100049377F080432AGGAGGVDIQKGERWHCQNPVCGSEILVTTSSRAQGGSNPRCSCGEIMKKPYTQPGLRPFESEVEARVKLEASRN
Ga0066655_100049378F027294GGAGGMRVFRGFAIALMLALISLGIFILYNSMARRSAAEADSVIAGAVLFSLALTLLYYITRPTI
Ga0066655_100049379F026411AGGMKGQEQKGSAAPMGTSPATECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNHYLNLFLCAKHARELGLL
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