Scaffold Ga0066655_10001657

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10001657
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8084
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014831	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100016572	F014831	AGG	MVAVPAAVGVNVTEQLPLERVQLVALKVPARPVAVKATEPAGVVAPAPLVSATVAVQVDDWLIGTEAGVQTIVVEVVRRVAFTVPLVAPLLELPACTASLGV
Ga0066655_100016575	F014831	AGG	MVAVPAAVGVNVTEQLPAPDRVQLVALKVPARPVAVNATEPAGVVEPAPLVSATVAVHVEGWLMATVLGLHTMVVDVVLRFDMMEPFPAPLLELPACTASLAV
Ga0066655_100016577	F014831	GGTGG	VVVGVKLTEQLPPERVQLEVLKLPAPPVALNETDPAGVVAPAPLVSATVAVHCEGVPIGTLDGLQTIVVDVVRSVAVTVPLLAPLLELPA